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Flow chart of <t>microarray</t> data analysis. The agilent single color microarray platform was used having more than 58,000 transcripts and further data processing was done using agilent GeneSpring software followed by pathway analysis using GSEA database. Numbers in parentheses illustrates number of pathways enriched in each category using GSEA database. DEGs-Differentially expressed genes, ANOVA-Analysis of variance, BP-Biological pathway, CC-Cellular component, MF-Molecular function.
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Flow chart of <t>microarray</t> data analysis. The agilent single color microarray platform was used having more than 58,000 transcripts and further data processing was done using agilent GeneSpring software followed by pathway analysis using GSEA database. Numbers in parentheses illustrates number of pathways enriched in each category using GSEA database. DEGs-Differentially expressed genes, ANOVA-Analysis of variance, BP-Biological pathway, CC-Cellular component, MF-Molecular function.
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dna microarray surescan scanner  (Thermo Fisher)
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A Venn diagram for generalizing chromosomal abnormalities from 410 samples by karyotyping and CMA. CMA = chromosomal <t>microarray</t> analysis.
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microarray scanner dna microarray scanner surescan high‐  (Agilent technologies)
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A Venn diagram for generalizing chromosomal abnormalities from 410 samples by karyotyping and CMA. CMA = chromosomal <t>microarray</t> analysis.
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Agilent technologies dna microarray scanner surescan
A Venn diagram for generalizing chromosomal abnormalities from 410 samples by karyotyping and CMA. CMA = chromosomal <t>microarray</t> analysis.
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Average 90 stars, based on 1 article reviews
dna microarray scanner surescan - by Bioz Stars, 2026-06
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Flow chart of microarray data analysis. The agilent single color microarray platform was used having more than 58,000 transcripts and further data processing was done using agilent GeneSpring software followed by pathway analysis using GSEA database. Numbers in parentheses illustrates number of pathways enriched in each category using GSEA database. DEGs-Differentially expressed genes, ANOVA-Analysis of variance, BP-Biological pathway, CC-Cellular component, MF-Molecular function.

Journal: bioRxiv

Article Title: Synovial fluid transcriptome dynamics in osteoarthritis progression: Implications in pathogenesis

doi: 10.1101/2024.06.24.600143

Figure Lengend Snippet: Flow chart of microarray data analysis. The agilent single color microarray platform was used having more than 58,000 transcripts and further data processing was done using agilent GeneSpring software followed by pathway analysis using GSEA database. Numbers in parentheses illustrates number of pathways enriched in each category using GSEA database. DEGs-Differentially expressed genes, ANOVA-Analysis of variance, BP-Biological pathway, CC-Cellular component, MF-Molecular function.

Article Snippet: Following hybridization, the array slides were washed and scanned with an Agilent SureScan High-Resolution DNA Microarray Scanner.

Techniques: Microarray, Software

A Venn diagram for generalizing chromosomal abnormalities from 410 samples by karyotyping and CMA. CMA = chromosomal microarray analysis.

Journal: Medicine

Article Title: Diagnostic accuracy and value of chromosomal microarray analysis for chromosomal abnormalities in prenatal detection

doi: 10.1097/MD.0000000000025999

Figure Lengend Snippet: A Venn diagram for generalizing chromosomal abnormalities from 410 samples by karyotyping and CMA. CMA = chromosomal microarray analysis.

Article Snippet: Finally, all DNA samples were loaded with Affymetrix CytoScan HD/750k array (Affymetrix, CA), hybridized, and scanned with DNA MicroArray SureScan scanner (Affymetrix), according to the manufacturer's procedures.

Techniques: Microarray

The ROC curves of karyotyping and CMA for screening chromosomal abnormalities. (A) The AUC of karyotyping was 0.90 (95% CI: 0.87–0.93), the sensitivity and specificity was 87.56% and 91.22%, respectively. (B) The AUC of CMA was 0.93 (95% CI: 0.90–0.95), with 90.68% sensitivity and 94.40% specificity. (C) The AUC of the combination of CMA and karyotyping was 0.98 (95% CI: 0.96–0.99), the sensitivity and specificity was 96.04% and 97.59%, respectively. AUC = area under curve, CI = confidence interval, CMA = chromosomal microarray analysis, ROC = receiver operating characteristic.

Journal: Medicine

Article Title: Diagnostic accuracy and value of chromosomal microarray analysis for chromosomal abnormalities in prenatal detection

doi: 10.1097/MD.0000000000025999

Figure Lengend Snippet: The ROC curves of karyotyping and CMA for screening chromosomal abnormalities. (A) The AUC of karyotyping was 0.90 (95% CI: 0.87–0.93), the sensitivity and specificity was 87.56% and 91.22%, respectively. (B) The AUC of CMA was 0.93 (95% CI: 0.90–0.95), with 90.68% sensitivity and 94.40% specificity. (C) The AUC of the combination of CMA and karyotyping was 0.98 (95% CI: 0.96–0.99), the sensitivity and specificity was 96.04% and 97.59%, respectively. AUC = area under curve, CI = confidence interval, CMA = chromosomal microarray analysis, ROC = receiver operating characteristic.

Article Snippet: Finally, all DNA samples were loaded with Affymetrix CytoScan HD/750k array (Affymetrix, CA), hybridized, and scanned with DNA MicroArray SureScan scanner (Affymetrix), according to the manufacturer's procedures.

Techniques: Microarray